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Bioedit Company local blastn algorithm
Local Blastn Algorithm, supplied by Bioedit Company, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/blastn+algorithm/algorithm+blastn+local/pmc13128122-76-15-10
Average 86 stars, based on 1 article reviews
local blastn algorithm - by Bioz Stars, 2026-11
86/100 stars

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Sequencing:

Article Title: Antibiotic resistance in potential probiotic lactic acid bacteria of fermented foods and human origin from Nigeria.
Article Snippet: Sequences were edited using BioEdit (Finch-TV version 1.4.0), and thereafter compared with sequences on the NCBI database using the BLASTn algorithm (blast.ncbi.nlm.nih.gov/Blast.cgi).

Article Title: Molecular identification of nontuberculous mycobacteria isolates in a Brazilian mycobacteria reference laboratory.
Article Snippet: This study utilized the hsp65 polymerase chain reaction restriction analysis (PRA) method in the identification of nontuberculous mycobacteria (NTMs) isolated in a Brazilian mycobacteria laboratory.. NTM isolates from clinical specimens collected from 192 patients were characterized using the hsp65 PRA method and analyzed using both 16S rRNA and hsp65 gene sequencing.. Only 30% of the NTM strains were correctly identified through PRA, though the suggested inclusion of an additional restriction enzyme could increase the resolution to roughly 90%.

Article Title: Complementary Mechanisms for Degradation of Inulin-Type Fructans and Arabinoxylan Oligosaccharides among Bifidobacterial Strains Suggest Bacterial Cooperation
Article Snippet: The sequence results were aligned and assembled with BioEdit software ( 68 ) and were evaluated through comparison with the nucleotide collection database ( 69 ) using the BLASTn algorithm ( 70 ) (see Table S1 in the supplemental material). .

Article Title: Exploring cultivable Bacteria from the prokaryotic community associated with the carnivorous sponge Asbestopluma hypogea.
Article Snippet: Sequences were aligned using BIOEDIT software (http://www.mbio.ncsu. edu/bioedit/Bioedit.html) and compared using the BLASTn algorithm to sequences of GenBank (http://blast.ncbi. nlm.nih.gov), and phylogenetic identification was confirmed using RDP (http://rdp.cme.msu.edu) databases (data not shown) (Altschul et al., 1990; Cole et al., 2003).

Comparison:

Article Title: Antibiotic resistance in potential probiotic lactic acid bacteria of fermented foods and human origin from Nigeria.
Article Snippet: Sequences were edited using BioEdit (Finch-TV version 1.4.0), and thereafter compared with sequences on the NCBI database using the BLASTn algorithm (blast.ncbi.nlm.nih.gov/Blast.cgi).

Article Title: Molecular identification of nontuberculous mycobacteria isolates in a Brazilian mycobacteria reference laboratory.
Article Snippet: This study utilized the hsp65 polymerase chain reaction restriction analysis (PRA) method in the identification of nontuberculous mycobacteria (NTMs) isolated in a Brazilian mycobacteria laboratory.. NTM isolates from clinical specimens collected from 192 patients were characterized using the hsp65 PRA method and analyzed using both 16S rRNA and hsp65 gene sequencing.. Only 30% of the NTM strains were correctly identified through PRA, though the suggested inclusion of an additional restriction enzyme could increase the resolution to roughly 90%.

Article Title: Complementary Mechanisms for Degradation of Inulin-Type Fructans and Arabinoxylan Oligosaccharides among Bifidobacterial Strains Suggest Bacterial Cooperation
Article Snippet: The sequence results were aligned and assembled with BioEdit software ( 68 ) and were evaluated through comparison with the nucleotide collection database ( 69 ) using the BLASTn algorithm ( 70 ) (see Table S1 in the supplemental material). .

Article Title: Exploring cultivable Bacteria from the prokaryotic community associated with the carnivorous sponge Asbestopluma hypogea.
Article Snippet: Sequences were aligned using BIOEDIT software (http://www.mbio.ncsu. edu/bioedit/Bioedit.html) and compared using the BLASTn algorithm to sequences of GenBank (http://blast.ncbi. nlm.nih.gov), and phylogenetic identification was confirmed using RDP (http://rdp.cme.msu.edu) databases (data not shown) (Altschul et al., 1990; Cole et al., 2003).



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